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Ok. This proves it, cPanel is totally buggy!-- Customer Add quote.
If you want to set up a yum repo you can easily mirror an existing site using wget. To do this you will need to run this command.
wget --mirror -np --no-host-directories -A rpm,srpm http://downloads.whamcloud.com/public/lustre/latest-maintenance-release/
In this case we are mirroring the lustre rpm repo.
After the files are downloaded you can run the createrepo command to create yum metadata.